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Food System Microbiomes 2025 International Conference, Nov 25-28, 2025, Wageningen, NL

THIS WAS FSM 2025

Dear colleagues,

as we look back on the Food System Microbiomes 2025 International Conference, held in Wageningen, the Netherlands, from 25-28 November 2025, we are pleased to share some highlights from this inspiring event.

This conference marked the second event organised by the MicrobiomeSupport Association, continuing our mission to increase awareness and foster collaboration around food system microbiomes.

The meeting brought together over 180 international delegates and offered a rich scientific programme addressing different segments of the food system and the role that microbiomes play within and across them. The programme included two keynote lectures by Nicola Segata, University of Trento, and Michael Wagner, University of Vienna, as well as 15 invited talks, 18 short talks, 29 science flashes and 60 posters.

Three outstanding contributions were recognised with prizes for excellence in research:

  • Lakhansing A. Pardeshi, Wageningen University & Research, for “Conservation, evolution and recombination of tailocins in the genus Pectobacterium, and consequences for species and strain level interaction” — Best Basic Research
  • Edoardo Zaccaria, Wageningen University & Research, for “Microbial seeding as an early-life intervention to reduce methane emissions in dairy cattle” — Best Applied Research
  • Chiara Traina, University of Turin, for “Interconnections across microbiomes: How do plant holobionts and food fermentation relate? A focus on Taggascia olive tree ecosystem” — Research best showcasing the interconnectedness of microbiomes across the food system

Special features of FSM 2025 included the Early-Stage Researcher Session, “The Many Pathways to Sustainable Food Systems Powered by Microbiomes,” designed and chaired by Ricardo Garavito Duarte and Kevin Jerez-Bogota; the regulatory workshop organised by Yolanda Sanz and Javier Moreno; and the project exhibition session highlighting ongoing research and innovation from EU-funded projects and research infrastructures.

The Early-Stage Researcher Session featured contributions from early-stage researchers and showcased emerging talent in the field. It highlighted interconnections across human, animal, plant, food and environmental microbiomes and reflected the systems-level thinking needed to address global challenges.

The regulatory workshop provided participants with the latest scientific criteria for evaluating microorganisms used in regulated food products and discussed advances needed in regulatory science to improve guidance for assessing and authorising microbiome applications. The workshop featured talks by Javier Moreno, Rosella Brozzi and Sandrine Claus, followed by a roundtable discussion.

The project exhibition session highlighted ongoing research and innovation from EU-funded projects, including Microbiomes4Soy, TRIBIOME, WHEATBIOME, HOLiFOOD and FoodSafeR, alongside the local research infrastructure UNLOCK. It provided a dynamic platform for collaboration, networking and knowledge sharing among researchers, industry and other stakeholders.

The conference is also accompanied by a themed collection in the journal Sustainable Microbiology.

We gratefully acknowledge the support of our sponsors and exhibitors: QUANTUM Europe, Applied Microbiology International, QIAGEN and ISME.

We would like to thank all participants, speakers, chairs, sponsors, exhibitors, organisers and supporters who contributed to making FSM 2025 a successful and inspiring event.

We look forward to continuing these discussions at the next Food System Microbiomes Conference in Paris in 2027.

On behalf of the Organising Committee,

Portrait Hauke Smidt
Hauke Smidt
Portrait Angela Sessitsch
Angela Sessitsch

 

Poster Prize Winners

Lakhansing Pardeshi
Lakhansing Pardeshi

“Attending the FSM 2025 conference was a great experience, significantly widening my understanding of microbiome research and its scope in solving modern challenges related to diet, health, and agriculture. As a bioinformatician, I was particularly excited to see researchers showcasing advanced data-driven approaches across the field. I had engaging conversations with researchers during the poster sessions.”

View poster
Chiara Traina
Chiara Traina

“What I most appreciated about this year’s FSM conference was the ESR session, which gave young researchers in microbiome-related fields the chance to present their work creatively on such an important stage and to highly relevant audiences. It felt challenging for the participants and exciting for the listeners – definitely an experience to look forward to in the coming years!”

View poster
Edoardo Zaccaria
Edoardo Zaccaria

“The FSM Conference was a very inspiring meeting. I especially appreciated the high scientific level of the presentations and discussions, and the diversity of topics, ranging from the rhizosphere to fermented foods, from food production to bioinformatic approaches, all connected through microbiomes. The organisation managed to combine excellent science with a relatively small, informal atmosphere that was ideal for exchanging ideas and starting new collaborations. I am very honoured that our work was recognised with a poster prize.”

View poster

 

MAIN TOPICS

Interconnectedness of microbiomes across food systems


Microbiomes for global health


Microbiomes for mitigating climate change


Microbiomes for circularity/sustainability

Microbiomes for nutrition and human health


Microbiomes for mitigation of risks in the food system


Novel microbiome concepts, applications and technologies

 

CONFIRMED INVITED SPEAKERS

Nicola Segata
Department of Cellular, Computational and Integrative Biology - CIBIO, University of Trento, Italy

Jan Sikkema
Holomicrobiome Institute, The Netherlands

Daniele Daffonchio
Department of Agriculture Forestry and Food Science - DISAFA, University of Turin, Italy

Gerlinde B. De Deyn
Soil Biology Group, Environmental Sciences Group, Wageningen University, The Netherlands

Eiko Kuramae
Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), The Netherlands

Ana Portugal Melo
MIRRI-ERIC, Portugal

Angela Sessitsch
Center for Health & Bioresources, AIT Austrian Institute of Technology GmbH, Austria

María Rosa Pérez Gregorio
Institute of Agroecology and Food, University of Vigo, Spain

Alexandre Soares Rosado
King Abdullah University of Science and Technology (KAUST), Saudi Arabia

Rosa Doménech Mata
ITENE, Spain

Stéphane Chaillou
Micalis Institute, INRAE, France

Christophe Courtin
Food and Microbial Technology, KU Leuven, Belgium

Martin Wagner
Center for Food Science and Public Veterinary Medicine, University of Veterinary Medicine & Austrian Comptence Center for Food Quality, Safety and Innovation, Austria

Ine van der Fels-Klerx
Business Economics Group, Wageningen University, The Netherlands

Marnix H. Medema
Bioinformatics Group, Wageningen University, The Netherlands

Paul Cotter
Department of Food Biosciences, Teagasc Food Research Centre, Ireland

Michael Wagner
Centre for Microbiology and Environmental Systems Science, University of Vienna, Austria

 

Organizing Committee

Hauke Smidt
Wageningen University & Research, NL

Angela Sessitsch
AIT Austrian Institute of Technology, AT

Luca Cocolin
University of Turin, IT

Tanja Kostic
MicrobiomeSupport Association, AT

With the support of the MicrobiomeSupport Association’s Extended Executive Board and Members of the Wageningen Microbiome Center

 

Local organizing committee

Lonneke Budel
Wageningen University & Research, NL

Nikolien van Gelderen
Wageningen University & Research, NL

Annelein Meisner
Wageningen University & Research, NL

Mirjam Wijntjes
Unlock - part of Wageningen Microbiome Center, NL

Sarash de Wilde
Wageningen University & Research, Wageningen Microbiome Center, NL



Organizing Institutions

 

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